Scaffold JGI25382J43887_10019552

Overview

Basic Information

• Taxon OID: 3300002908
• Scaffold ID: JGI25382J43887_10019552
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027134	Metagenome / Metatranscriptome	195	Y
F032214	Metagenome	180	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_100195522	F032214	N/A	VVDLDPGLIAVIVVAAFFLVWYYGAFVYTRRLARRIGTELKRAVIGLGGSSKIQWFGTTAFRMRTEGASPPFQEFSITVTLRPREMPINWAIGTAQGRRDAALVEASLRKDPRIEFELVDPQTRIGRRRSRSKAGWSNVSIDGRELLLSSDDERSARRVLESVDPGTLDPIAALHVTAGQQPGIAASVSVAPGAASRGIAAIRALAERLAG*
JGI25382J43887_100195526	F027134	GGTGG	VDPEVAAVISIPPYTSIVAGNQRSRSTDLDRYVRLEFGDCESRWLADGVHSNHSDHDPLTSDNDGRLLRRLTQAIASFF*