Scaffold JGI25613J43889_10023109

Overview

Basic Information

• Taxon OID: 3300002907
• Scaffold ID: JGI25613J43889_10023109
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1756
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005133	Metagenome / Metatranscriptome	411	Y
F062085	Metagenome / Metatranscriptome	131	Y
F074441	Metagenome / Metatranscriptome	119	Y
F084681	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25613J43889_100231091	F005133	N/A	AAAGAAIGAVKGVKDKNKKEAAEGAALGALTAYLMESGRGHELNLPKGAKLELELERALYLVKE*
JGI25613J43889_100231092	F062085	GGA	MEKLQAFQAAACEGGFVAIEESEEDTVLWLKKATVEAEDRICLDSLTNSATVYWATIPWKINSKTFREASALRAWILSRPGALAS*
JGI25613J43889_100231093	F074441	N/A	MTNHEALLRLSVDKNDHLAVTSLHENNAEIIRTTVMRYFGSGTAAENVEFELMKRMAGHARLYEDSEDLDVWLAGCANTECDRMRNEAIHDKANTD*
JGI25613J43889_100231094	F084681	AGGAG	MATHEHRITPRFKLHSRLSFHRMETLTEGEHQARTINISTRGVYFATNVILCVGEALEVLLEMPKRVTGVKAGIRRFAGRVTHIESTNMLPGLSGIGVQLLYYERDLAGISKPNVL*