Scaffold JGI25613J43889_10008427

Overview

Basic Information

• Taxon OID: 3300002907
• Scaffold ID: JGI25613J43889_10008427
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2836
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053522	Metagenome / Metatranscriptome	141	N
F062199	Metagenome / Metatranscriptome	131	N
F079173	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25613J43889_100084272	F053522	AGGA	MTQVTPTTKRTTRKAQAAPPHIPPLVADTSKPAPASEVAARTPQQVAPIPQSAMQDAAFARNWWRVVIDAERTPYDRVLADVTVWGPNEAKLRAGDLVEVVDEQSTLFALLYLVEHVPAKFIRFAELIKAPLGGVAIGRIEARGNHYAQWRGPAKRWCVIGPTGTVVRDGILSKEEADRDVTTRNMPTSMAFVSHPRM*
JGI25613J43889_100084273	F079173	GGAG	MHRYREFGLTSEQDEVLRRAFRDGFKRAGLSFAQFLDALAWYRDHARPAADEVQLADAFAQFAADKGWPAEQRDGVLDLYRTIRDDGPTAVMQAPRPDEDRATVARTDELLRNDPARYWSDIEVQDAAFEARERLDGLAPAEGAALPRKASRDRQRIEEIEALLRDPSGDGQRRYWADAGLRTDYAHALARAHGGIDGAGGESMPSSPAMPQDVGTATAAA*
JGI25613J43889_100084274	F062199	GGAG	MPALTQDNVLLWLHGRRLGLVGDGSFSASSGLMVDSQLVGSKRGPVISQLALGNNGVGSVAFPAAVDGDVVLFALDLTTPANVTSSFEAIISTAGQIRQTSATNLSTKNIFFQIAPAS*