Scaffold JGI25613J43889_10005189

Overview

Basic Information

• Taxon OID: 3300002907
• Scaffold ID: JGI25613J43889_10005189
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3535
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000440	Metagenome / Metatranscriptome	1137	Y
F009833	Metagenome / Metatranscriptome	312	Y
F035434	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25613J43889_100051893	F009833	GGAGG	MHSPFEILKKEPAGSFRRFEPVSDLAAANIRIKELTTLSPGDYLVLDQRVHDDIAAGRSSFWLDSRRE*
JGI25613J43889_100051898	F000440	AGG	VXDDLLVXNRGTKYTPADRAEEYLERIAALTGAQQDDDGAYLLTTGRIRFLVGDKFVRVISHHGESTCFSVAADSDMRRAEVVASALLQLKNNPGLFEKWRELQGYTFKADGQMFSGTHWR*
JGI25613J43889_100051899	F035434	N/A	ARSLDGSPHRRRLAVRGCLNTEPATCRSRFLLRGICMLPGVLFLIPFLTQTRCRFVFTDMGWRWLVGEIDVPRPRQNGLLEQCLHILVPAGSALVAGEVENGVDGAEPTGQEYRTQNYLRRIVALTGATQRGNSYVLDVGKTEFSVRNGYVRRLRDVTDPECKYEETCFYSAYKGMPKAKQIATVLLQLTNNPALFDKWAAQSGAYKADGQVFTCXR*