Scaffold JGI25614J43888_10005241

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10005241
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4151
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000861	Metagenome / Metatranscriptome	857	Y
F043529	Metagenome	156	Y
F077826	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_100052413	F077826	N/A	MNLKLRELSRTILKLNSGGSLESLYTNYSVCLRHLTGYLSQKDDSEKKALLAVLRNMAFNKHQDLGRPVDEATIAREMKDTFRRLILQVLEATTKEDIDTLYEAIEKGEIK*
JGI25614J43888_100052415	F000861	N/A	MTSLPAKVIAIEERGDQYQVIVQISTKYRGSFNTLAFGEIKPYIGSLKDGRLDLVYYRDPGLSVGDQFLLWTLH*
JGI25614J43888_100052416	F043529	GAG	MSTFTPSPEFDYYYKACRKGDREAKAVAVSYSPVGVLADASEITGLPRDNFEVHEISNAEFEALHSK*