Scaffold JGI25614J43888_10001149

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10001149
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7772
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063020	Metagenome / Metatranscriptome	130	N
F064606	Metagenome	128	N
F083133	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_100011494	F063020	N/A	MEKMKNTTRSSVLAASALAWSCWASGCSTSLSNNRALFRPTEKPAYVEGRSDEIKNLYWAQRNMVSKDADPQLKRKLAEVVVPAYYDSDGQLIEAHREVIEVVQ*
JGI25614J43888_100011497	F064606	GGA	MKYHIDTYMKNMYSLAAKHLMLFSFKPHLAALMFIAAGSISQALGQAGGIINGFALIGAFGGLVFAGWQAKMGRTEMIKYGLLGSALCGLAWAIASAMFAAGGQSVSIQLQSPN*
JGI25614J43888_100011499	F083133	AGG	MSICDTCLIHRLSISVILTMAKTPFYAVRQPGLSRLSLQDGPAWRAFCYHDIRAYTLDSDLLILHHADCVIALRGVNLRQLYLSLLVEEVYEIPLHSAQIPPSECAVTEISIQQISTDD*