Scaffold JGI25614J43888_10000484

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000484
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11001
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F002750	Metagenome / Metatranscriptome	533	Y
F018221	Metagenome / Metatranscriptome	236	Y
F044929	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_100004842	F018221	AGGAGG	MGRKRGTSTARRVVPTQRDVLRDVMLTAGKYGAWMTLRELARLTRYGETSISAQLRHLRKTKCGGYVLEKRVRKPEVVSSEEHFVVWEYRLTPRRVFAGRREETRRRRRQ*
JGI25614J43888_100004843	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKYLWRPDFRPRLAEWVADFALVGQAALEGPDAASRMVMFRLYYLGLAPYENARHFLGLSEQSWVIWSEEVRRRCGKELLRRGMFPPRKYFSNAV*
JGI25614J43888_100004846	F044929	GGAGG	MKRTLYLASGVSVLLTTLAFGHIMVHDTAHMMTHHEEGAAVFLTVHTILAVALGVLSLIGAYFLLTGWRRQSSN*
JGI25614J43888_100004847	F002750	AGG	MLNWLHRLLQTKYVGLLEGEVTRLRAENRALTNSLLGTAGFPPVDYPEPIKPQALPRLRKRSWHQIQAWKEAEAGSNEAGK*