Scaffold JGI25614J43888_10000234

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000234
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15300
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F013395	Metagenome / Metatranscriptome	271	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000023410	F051385	GAGG	MYGYNWLRIASGLALLFSSVIVVVQSTLRNDWGNQLYYGTSLIAVFGYIFLTSRSKEEESDSPWWW*
JGI25614J43888_1000023411	F000512	AGGA	MISVLRETHDTPEAVARSLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDPATGSLLREVVELRQEPKYPAVNRWHIEKWMPPETYGSPRAWWAQTLEIEGGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRHHPRSAGKRALHDREQRQERAYDAYAYDILDDAVPAFHRQPFVSVL*
JGI25614J43888_1000023412	F013395	N/A	MGRAFIAGILLVLSGAIAVRGKTESLLFVFLRVDHKQDIAILRPMIAPDIGVQLDSGPRQLTPGTVLACEMLPREHDAIVEGQVGKVSEIVLNCGEHKFVVKTLDFAPNRK*
JGI25614J43888_100002348	F000696	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDAVLLPYANSAYRKTQRALGNAGAGGFIQDDVLLVVPAVAQVDTSLQVAITDATAPPNQLPTDLLVPVKIWERPNGSTQDFVEMVDLSQHGGLPSRGQGLTLSVWEWRADGVYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWSRGSPLAEKWDEAASDALEDLVAAAVRREQQSARRRRPFSARSGYTPF
JGI25614J43888_100002349	F000739	GGAG	MMTRVEVWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQTGIGATMRIGAAAAVINAVIGVAAYLQKSPLPDT*