Scaffold JGI25614J43888_10000113

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000113
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23062
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020584	Metagenome / Metatranscriptome	223	Y
F030232	Metagenome / Metatranscriptome	186	Y
F093326	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_100001131	F030232	N/A	MTNREAILRLSVNTGDGLAMTWLRDNNAKVIRAAVTRYFGAGPVADKAEGALVQRMADHARSYEHQENADEWLARCANTECDRLRNEGIHEKANRD*
JGI25614J43888_100001132	F020584	GGA	MEKLQALQAAAREGGFVQVEESEEGTVLWLRKEKSDAATKTHQRICIDSLANILTVYWMTALGKIDSKTFRNVPSLQEWFALQPAE*
JGI25614J43888_100001135	F093326	N/A	MWTYIVGPFLAFLPKEWRKALPFSDAVNWPRAVTLSGLAEMAVALVALLYWYSISMTTWVNRGLEVAMSGKAGSGITDQAIGAMAWFLWANHPLTWLLGYFSVEGAVRMCGAAFADSLLGTLPLFLVDKGVRVFLGGSKTAQEAPGAASSFLGAVSEKILESSVPVSADEISFQKGATEEVMEIRASRKKADWDPPRVVRYRESYYRLEDCSKCAGTRPFRYRLRRLSAGVPGRKVLVYEPVDAVVAGTR*