Scaffold JGI25614J43888_10000099

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000099
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25538
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033387	Metagenome / Metatranscriptome	177	Y
F067466	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000009912	F067466	AGGAGG	MKKLVLSFLLVPLLVPGAAFGQNNGQGKSTAHKASTISGKVSQDGKSLIGKNGEPWLVENPGALAGHESQQVKVKCQIASGSHDIRIVSVKKVATQTKYAVNLGDAAFRR*
JGI25614J43888_1000009914	F033387	AGGAGG	VLRKLNLLVALLWSVVPWVAXCGQEQQPSLGDVARQARKDKEKNAGTPRKVITEDNLPSSKALSGLSDLGGSQGSDGESAMAKGLAAIDKVEATLDKLDPLDRSTLAKAALLGNDVAFPDRRVWEDKLYSAKQQYVSHGRELMREVRRILADAQSLRAAPGGQEKLSPNDPRAQEIVRRMRETMEDAVRTDAAYQAVVMEGWDRAKQAKN*