Scaffold JGI25614J43888_10000065

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000065
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33799
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000207	Metagenome / Metatranscriptome	1597	Y
F001069	Metagenome / Metatranscriptome	787	Y
F012271	Metagenome / Metatranscriptome	282	Y
F015012	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000006513	F000207	N/A	MKRIFASVLTTILIVAMTLAAMFILVRTTVYVTSIESPLQRAMAIAAELLLGVVLLLGTVWLATHLAVRIFGVKDAPSAGGTVA*
JGI25614J43888_1000006516	F015012	GGAG	VIAVRAHLPGYGRLHVFKNAAIRTGVYAGVGLAMVLVAWVFVANRAPALEPFALERNIAAAVALGLFAAVPVLRFLRLPGPLLASSLXAWSILALTYRLLCVYFWGLAERYSAVQLFTIGAILYMILATLSWIGTCIWRARE*
JGI25614J43888_1000006533	F001069	GAGG	MQFLPGFTVQCINPQCEARGHWLRADVMRPFGLEGLCPCCGDSLRNVPPPLGPRFRMRPRPLTARPPLRPRPR*
JGI25614J43888_1000006534	F012271	AGGA	MYVITYHRLDQMEGPRPRPVAAESAQALIELLERIGIDFRLSEVRGALEDILRFGSANIPDLWLSDEEMIEKGLVES*