Scaffold draft_10471272

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold draft_10471272

Scaffold draft_10471272

Overview

Basic Information
Taxon OID	3300002898 Open in IMG/M
Scaffold ID	draft_10471272 Open in IMG/M
Source Dataset Name	Metagenome Biopara biogasfermenter May 2013 pooled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	563
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	50.823236	Long. (^o)	7.142629	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_104712721	F075995	AGGGGG	MKNKLFGVYKPLGKANVFITKNFKRVFYGFRTLYAKDLTGRVYVRYKNKYYQAHYDGRHTYNVRIR*
draft_104712722	F029085	N/A	LKIDDLLEENISEQLESGTSDLVSLIAISELTNLNKLKVITRLKGEQIPLLSKLYMYAETFNIPFIRNLADNILQLQISIRGLGRKELVNIVRESAPQEVKKGLFGTKDVFR*

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