Scaffold draft_10244958

Overview

Basic Information

• Taxon OID: 3300002898
• Scaffold ID: draft_10244958
• Source Dataset Name: Metagenome Biopara biogasfermenter May 2013 pooled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 970
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location

• Coordinates
  • Lat. (^o): 50.823236
  • Long. (^o): 7.142629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088942	Metagenome / Metatranscriptome	109	Y
F099496	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_102449581	F099496	GGA	VIFLSVYLIGGSESKMEQVIKEQVKKSCDKIGICLYAETKGSIHIYPYSQIVTSKLIAVIDMIKEKNAGMVDYYIGYDGLRREIYISVGDSF*
draft_102449582	F088942	AGAAGG	MEWFRRDNTEGYSEEILKVMNEKMDKIFANLDEEERENKSYIDYLKEQILSKY*