Scaffold draft_10034345

Overview

Basic Information

• Taxon OID: 3300002898
• Scaffold ID: draft_10034345
• Source Dataset Name: Metagenome Biopara biogasfermenter May 2013 pooled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5106
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location

• Coordinates
  • Lat. (^o): 50.823236
  • Long. (^o): 7.142629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F054066	Metagenome / Metatranscriptome	140	N
F079824	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
draft_100343454	F054066	AGG	MFRTTRKAKELNRFRVGKGSPGLKAVLYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDGVGAFVMPNEEQMLRQLHDRYALYINYNINSSVPGQVTEELEPIAFKYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA*
draft_100343455	F029451	GGAGG	MAVDLEDLIASTSSNAGQPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYQPFLDPDTGEFTYGRYDNRVLTAICEGALSGRISLDGKSRDEIIRIFQAVGSTVQEEPAGRSGILGRFDY*
draft_100343456	F079824	GGAGG	MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYVDALRGRRVISNYKTSFSEYVAVEEIARMVVEDNIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHVDGEPCHKDRCKEKHVIYLYQHDPYLHEEVIRLNAEAFADLYNTNEIIAVPKRKSKRRKT*