Scaffold draft_10024143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold draft_10024143

Scaffold draft_10024143

Overview

Basic Information
Taxon OID	3300002898 Open in IMG/M
Scaffold ID	draft_10024143 Open in IMG/M
Source Dataset Name	Metagenome Biopara biogasfermenter May 2013 pooled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6753
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter → Biogas Fermenter Microbial Communities From The University Of Hamburg, Germany

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	50.823236	Long. (^o)	7.142629	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105255	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_100241436	F105255	GAGG	MENIPENNKVFTKLVDKHYSPLVIRKYTHWGFPIYVGIIADNDLSDLDDEVVAFMEERKEENWVNDIQKLRNLAGAMTEHLNNHYCRAEGVAVVFYVDKMFISSLHGDFMNHTACRIEFYSLLTMSIGV*

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