Scaffold JGI24802J43972_1001485

Overview

Basic Information

• Taxon OID: 3300002896
• Scaffold ID: JGI24802J43972_1001485
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040840	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24802J43972_10014851	F040840	AGGAGG	LNTKSEDVNPAQFAQVNEVDEVRPSERAAPRKVFVEPEVSFPIDVLEATTFFQLTDSGSTT*
JGI24802J43972_10014852	F040840	AGGAGG	LNLKDENLYPAQYSQGDEIEEVSTAGKATTRKAFVEPEVSFPIDVLEATTFFQFTESGATN*