NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0005253J43195_1013209

Scaffold Ga0005253J43195_1013209


Overview

Basic Information
Taxon OID3300002884 Open in IMG/M
Scaffold IDGa0005253J43195_1013209 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_100m_A (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED42(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018725Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0005253J43195_10132091F018725N/AVKVIAAIAVMGGGFFAYQTVNAADITGNAGVSYSDTRTFRGVKQADDTLGVNVGLATSLAEKVSLGLSLDSFNALESAQTNELRTGIVLGYDVCETASVSLGYTNYDYQSATSNSEIGLGVSVETLLNPSLLYATDSDNDSDVTEISVGHSLSLSEQFGLTLGGSLGSVDAAADYTYYSVGATVTTSVGGADTFAGVALVDNDNAGSDSETVFSVGLSLKF*

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