NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0006865J43189_100375

Scaffold Ga0006865J43189_100375


Overview

Basic Information
Taxon OID3300002873 Open in IMG/M
Scaffold IDGa0006865J43189_100375 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 66 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007465Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0006865J43189_1003752F007465GGAGMPSIESKTKPSSSEATDPSTMMASFWTQWLEQSSRGTQALLEAMQTVGDPQQIQRRWLDAVSQSLDDFMRTPTFLELLGNNLKTITDLKGMQDEVIQDTARHFGLPLAADITGLFERLHSTEQNILNRLQAIEERLKGIETKH*

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