NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_1024447

Scaffold draft_1024447


Overview

Basic Information
Taxon OID3300002853 Open in IMG/M
Scaffold IDdraft_1024447 Open in IMG/M
Source Dataset NamePDIso9.ppmwps2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameKootenay National Park, British Columbia
CoordinatesLat. (o)51.17Long. (o)-116.16Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039222Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
draft_10244472F039222N/ACIRDRRYENFLAALADWARVKEQWLGEKKIDLQSRLRDIERRLSLQLRRMRLLQAQLV*

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