NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_1004485

Scaffold draft_1004485


Overview

Basic Information
Taxon OID3300002853 Open in IMG/M
Scaffold IDdraft_1004485 Open in IMG/M
Source Dataset NamePDIso9.ppmwps2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameKootenay National Park, British Columbia
CoordinatesLat. (o)51.17Long. (o)-116.16Alt. (m)Depth (m).01
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020585Metagenome / Metatranscriptome223N

Sequences

Protein IDFamilyRBSSequence
draft_10044853F020585GGAMLRNTLRMINQQYQWFNQLRREESARRTLRYSLYQALEQVERLLEADMMEVPIEMQARLRQIVDAVDPQLAYRIDQVGASALDIQDIIFEAQDRLIKQVRSDPY*

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