Scaffold draft_1000042

Overview

Basic Information

• Taxon OID: 3300002853
• Scaffold ID: draft_1000042
• Source Dataset Name: PDIso9.ppmwps2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10567
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Kootenay National Park, British Columbia
• Coordinates
  • Lat. (^o): 51.17
  • Long. (^o): -116.16
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013285	Metagenome / Metatranscriptome	272	Y
F086350	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_100004213	F013285	N/A	MGVIALAIGVWVVAYLAGHRGLDTASQDMAGGTALVCFGFACYVLIRRVMRGPQH*
draft_10000425	F086350	N/A	MVKRLFRPLHRWPAVETFLLRLAGQFTTWPADDFGRFVSASVGTGMAGAIAAMPPHVEPLRPPPPLSIAPATIEMRFMRLHTEGRFDDMWEMLAEDAQRAWGDRESFIREMPRLDEWMEILEMEAVNVAVLETWTDQMHQRTYTNVARLLMRYRVRQHWREWTFDRQIHLVPAAGGWRTLCYPTRARSAATR*