Scaffold contig_10100

Overview

Basic Information

• Taxon OID: 3300002845
• Scaffold ID: contig_10100
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.270661
  • Long. (^o): -76.7142
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N

Sequences

Protein ID	Family	RBS	Sequence
contig_101002	F008616	AGG	MLKLKLRWELETGEVYEEWTRPNELAQAEKDLYNNRSIIKILTEESSPSNQLLLFLGHKIQQRVTKKMENIDTWKSKVVDIAAVDFETANFTKPVQSGE*
contig_101003	F008811	AGGA	MATTILSGRSLTLTIATVAYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDLTFLNDAGKTSPGSLYKALWDATESAPDTALAFVLTLTTGVTLTGNVLPVYPGISASGSDAQQCTVSLQVVGIPTEDLTA*