Scaffold contig_10042

Overview

Basic Information

• Taxon OID: 3300002845
• Scaffold ID: contig_10042
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3011
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.270661
  • Long. (^o): -76.7142
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F008183	Metagenome / Metatranscriptome	337	Y
F050321	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_100423	F050321	GAGG	MITLNKWYPLVQPTHTARELAFDKAVEKVQEEYKLAVECLKQVKKTEELEVELYNKRGRQNTIELGSFEDRRRFAIFV*
contig_100424	F003265	GGA	MRLFLFLLLLLLSKATAKESCIVSEFYGQSWLGNPTERHQRLSDWLTTNGNHCSSEQLVAIWNNLAMWAGVADSTELRGKILYFYARATEREKK*
contig_100425	F008183	AGG	MLGTDVMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMSIVSGASVIVGYLLNYWKH*