Scaffold contig_10023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold contig_10023

Scaffold contig_10023

Overview

Basic Information
Taxon OID	3300002845 Open in IMG/M
Scaffold ID	contig_10023 Open in IMG/M
Source Dataset Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4771
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location
Location Name	Williamsburg, VA
Coordinates	Lat. (^o)	37.270661	Long. (^o)	-76.7142	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012869	Metagenome / Metatranscriptome	276	Y
F017297	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_100233	F017297	AGG	MKITEQKNGNYTTFERVAYNGYYIVKLYKNGGLADKVMADTYKGAREYLRCFNLIAKNG*
contig_100235	F012869	AGG	MIAIHTKYLGPTDTRGSRIKAYTASWGTHKGFTVSIPYNHALDGVNVHFEAVKALVKKHNLDWNLEAMRYGDSADGKGFSFCFDSSKV*

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