Scaffold contig_10003

Overview

Basic Information

• Taxon OID: 3300002845
• Scaffold ID: contig_10003
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12889
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.270661
  • Long. (^o): -76.7142
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F038156	Metagenome / Metatranscriptome	166	Y
F079815	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
contig_1000312	F001629	AGGAG	MILNQGKLANGLVDELLEVIHRYDETMYMATAIGCLELVKQQLIIENLENEDD*
contig_1000328	F079815	GGA	MNDYSTILMRIEQSVKSLDKKCLNKQYDGFIQDIGSINNDLTMLSHWIGEQQVKESQSNRSE*
contig_1000338	F038156	AGGAG	MKREQYDFLIPPDLPKEVVHTMYYFPHRTESSLALAPRGPAQNELPCMAAHYDENRTLLFTRFI