Scaffold contig_10042

Overview

Basic Information

• Taxon OID: 3300002844
• Scaffold ID: contig_10042
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3689
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: USA: Williamsburg, Virginia
• Coordinates
  • Lat. (^o): 37.251274
  • Long. (^o): -76.791915
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054870	Metagenome / Metatranscriptome	139	N
F066774	Metagenome / Metatranscriptome	126	Y
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_1004210	F054870	AGGA	MKLLTALLIALPIASFAGESPKLRYNWIEGKYNYAPKSAKLQLNWIENQYEFVVPNSQLKLNTQSNNYEYVQTQIDPYQSQIGADDE*
contig_100422	F104778	GAGG	METKAWLIEEFDKDNNLVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTINNIEKKYDSSKFVVGL*
contig_100425	F066774	AGGA	MTQENTMASLELWVKQLQGSIDVQEIAKTKPAPIPDIAIPYLVFLRPYDKVGLLAATNKRRFTKCNIEFIFDGNSRKLIDVKMINQDEE*