Scaffold contig_10040

Overview

Basic Information

• Taxon OID: 3300002844
• Scaffold ID: contig_10040
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3704
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: USA: Williamsburg, Virginia
• Coordinates
  • Lat. (^o): 37.251274
  • Long. (^o): -76.791915
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F034109	Metagenome	175	N
F034150	Metagenome / Metatranscriptome	175	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F071155	Metagenome / Metatranscriptome	122	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
contig_100401	F009140	N/A	LTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTEYGRMEMNRAVSGAAMRIENGSVKEKYDGRELRRNVFRHGCYDFLNHPSRFGDNLVYQKGNV*
contig_1004010	F034150	AGG	MNTGTNAQSKPQFEGDIIKFKSPHSNVWLYDICKRNEKYGWLEWVALNNPTDRQKFVAMTE*
contig_100403	F040534	AGGAG	MNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRPVGNGEILIRLMERNELYDDFKDHMTRDKK*
contig_100405	F034503	AGG	MNKIEAHDILDRRKQGFAVPQYLVNRALVVSGDIAMACPPCQTTRMEGPGVVQGKGTGGLPYPFMAWDNPGFNQRNEGT*
contig_100406	F097199	AGGA	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEEDRMKTYGSLRHEVRMQMIEAGYCVTCYNFMAHCECDE*
contig_100407	F071155	GAG	MRHDIDWKKVHCKVGQRVPVYPLSDKVQPFIGEVKRIKMNRFGRVSYVIDDKEVMAEELLPAKNQTKLKMRVNQ*
contig_100409	F034109	N/A	MANRKNPFRAQTDFKLELSHEQRTILEVLGKGNMTQGMKVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPNQDDD*