Scaffold contig_10033

Overview

Basic Information

• Taxon OID: 3300002844
• Scaffold ID: contig_10033
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4116
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: USA: Williamsburg, Virginia
• Coordinates
  • Lat. (^o): 37.251274
  • Long. (^o): -76.791915
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F012869	Metagenome / Metatranscriptome	276	Y
F034109	Metagenome	175	N
F034503	Metagenome	174	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
contig_100331	F012869	AGG	MIAIHTKYIGPTNTRGARIKAYTADWGDRKGFSATIPYPYAHSYEVCHFQAVKALVEKHNLDWNLKDMRYGDSADGKGYSFCFDLSKVKE*
contig_1003311	F009140	N/A	LTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTEYGRMEMNRAVSGAAMRIENGSVKEKYDGRELRRNVFRHGCYDFLNYPSRFGDNLVYQKGNV*
contig_100334	F034109	GAG	MANKINLNSDKTQFSLNLSPEQKAILQMIGNGNLKQGLLVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPNQDDD*
contig_100337	F097199	AGG	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAMAKLLDYDLPSDNITDKQWADYCSLKHEVRMQMIDAGYCVRCYQFICECDEF*
contig_100338	F034503	N/A	MTKNEAHQLLDKRKQGLAVPLYLVNRALVVSGDISMACPPCQAARMESTGMAQGEGVGGLPDPFMAGDNSGFNQRNEGTQ*