Scaffold contig_10035

Overview

Basic Information

• Taxon OID: 3300002843
• Scaffold ID: contig_10035
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4190
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Jamestown, Virginia, United States
• Coordinates
  • Lat. (^o): 37.248966
  • Long. (^o): -76.787831
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F014955	Metagenome	258	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_1003510	F029048	AGGAG	MLNHIKDVIGDKCIVYNETYNVDEERQLIAFEPNDLAAIIKDVILTCADMCLDESNRQEILK*
contig_1003516	F007166	N/A	MEQRLEIALDNMEYGTELSQDDIDVIRAACGKPNNKRNVLLQSVFDDFGSIFGGSHA*
contig_100352	F014955	GGAG	MDIEKYIVAATGLGYLVVGLAQYFKGSPSNALIWLGYAAAQVGLWMNLK*
contig_100357	F007848	N/A	LFIRFCFGLYFCYGIPAKAQTVQLTDSRGYSMGTVQITGNTAQFVNPQGYITQTATLYPNQVVIQNPSLSNNPIVIGQPSYSVPPSPSTPPSPRVMQ*