Scaffold contig_10013

Overview

Basic Information

• Taxon OID: 3300002843
• Scaffold ID: contig_10013
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8555
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Jamestown, Virginia, United States
• Coordinates
  • Lat. (^o): 37.248966
  • Long. (^o): -76.787831
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037693	Metagenome	167	Y
F042791	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_100133	F042791	N/A	MFSTAFQANAFQNNAFQVYNPPPPDNNRVGGDDAWYTQEELRRIQKLHQKIAARQRLLEKATKDANAARKQAIRDLVSPVAKVKQPKVQSTQEVKADIPLAETEELQRSISYLERQRDNILQAVAYRQEYARIQANLRILEAKRLEELDDEESVLILLH*
contig_100135	F037693	AGGAG	MALVKKVVTCVHCKVDHEEYDETQFNDREKYLAYWNLPFEGPEADAAWAEKENMTFRPAPTVIPDIEGHISMADGTWVDSRSKHRENLKRNNCIELGNDVPTQQKKHELSRSEREHLKRTLAEVTYAKLR*