Scaffold contig_10023

Overview

Basic Information

• Taxon OID: 3300002842
• Scaffold ID: contig_10023
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3327
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.260193
  • Long. (^o): -76.737526
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027491	Metagenome / Metatranscriptome	194	N
F077217	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
contig_100236	F077217	AGGAG	MNHAIKDVIECKYTVKTFQERGYDEEVPIIGFAVEDLETVIKSVVLACADKVSDEQERRNILSLAS*
contig_100238	F027491	GGAG	MDDLQELHNDMMAEQERLEIALDKAEDGDMLTLAEIDLIRFHCGLPNKRRVNPVLTAIVDDFSNIFGGKQ*