Scaffold contig_10017

Overview

Basic Information

• Taxon OID: 3300002842
• Scaffold ID: contig_10017
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3754
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.260193
  • Long. (^o): -76.737526
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088887	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_100172	F088887	GGA	MPLWLRKTTFYMIKEYYDKQNEEAEKQQNMMKNKGKSEISRPNVTPKSTYTTKAD*