Scaffold bg3kmer60_1024919

Overview

Basic Information

• Taxon OID: 3300002837
• Scaffold ID: bg3kmer60_1024919
• Source Dataset Name: Biogas reactor microbial communities from SLU, Sweden, that are enriched on cellulose - Sample No3 60kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1668
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities From Swedish University Of Agricultural Sciences, Alnarp, Sweden, And As, Norway That Are Enriched On Cellulose

Source Dataset Sampling Location

• Location Name: Sweden: Sk?ne County
• Coordinates
  • Lat. (^o): 55.656904
  • Long. (^o): 13.082968

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
bg3kmer60_10249191	F075995	AGGAG	LRRYRPLRKANVHIITNDFKKVFYGMRTLYTKGLSTQKYIRYKNRYYPAYYDGR
bg3kmer60_10249192	F029085	AGGAG	LKDIKNDKLKINELLEENINEQLENGSSDLVSLIAISELTNLDKLKVITRLKEEQVPLLTKLYMYAETFNVPFIRNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRGLFGTKEVFR
bg3kmer60_10249193	F047639	AGGAGG	MRFLNKHKYLRVIKFNSDKSSNITYHLSSKFKPNFLINPDHIFYYNGYRTVIITDKSAETINPIDFESKFNANDFQTAIESKLIKDTFTTLKHNIFDTPTILLIINLVITLGVLYFLLKSQGVI*