Scaffold B570J40625_100311632

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100311632
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1003116321	F030767	GAGG	MATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVKCGVMGVVMMEDVKDANV*
B570J40625_1003116322	F029049	GAGG	MAMCTMSRLAKVVLDRSQEITAHRVGLERTIVRNANPSDASNYGQVYKNWHELVWQEAESAAAEIAVANYFGDYGFTPAIDNAHDTADVGDNIEVKWTKHSNGHLILQNRGPGRPNDVAILVTGFSPVYVLLGWMPVHMAKQPRYKHPHQNNFWVPRSSLFEMQYLKRSNYGDV*
B570J40625_1003116324	F007029	AGGAG	MSFLDNYEDVNARIKRFRSEHPSGRLIAFIDSFDIEKGTILVRAEAYRKYEDQVPSAVDYAFGNVNTYPQNMRKWMVEDTVTSAFGRVIGLLSPSEGGRPTRQDMEKVETLPASADPWSTKASIEDMATMASAVLEIGKELGGELVAEAPRCAHGTMIWAEGTAKATGKPWAAYKCTEKVRSNQCNPYWHVLNSSGKWVPQV*