Scaffold B570J40625_100294010

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100294010
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1652
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1002940101	F045700	GGA	MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEIIDSKASQIIESNIERNFPGHYDKWKTKN
B570J40625_1002940102	F028145	N/A	MKLFLVFFINLALSLGTSILLYKLFKLDVSPTIISIGLIVAYMFLPQRFHDWIAEK*
B570J40625_1002940103	F014847	AGG	MEFESNADILRDLMNQLHTLHKENARLIQKIEDLEKHNEELNRKLKSIQALFL*
B570J40625_1002940104	F016528	N/A	MINNNELFAKVLADNPLPYRFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPYGLPNYYIDVETVYGKVE*