NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100268075

Scaffold B570J40625_100268075


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100268075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1762
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F003422Metagenome / Metatranscriptome487Y
F036238Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
B570J40625_1002680751F036238AGGCGGMGDRANFAFKQSDTNTIVLYGHWAGYEMLANLANAVDKARSRWTDESYATRICVSQLVGSEWNSETGWGLQINSISDNEHKIPVINWGTQTFSLHEEAPHSFDSQIRGVNDEPIF
B570J40625_1002680753F001043AGGAGMADTYQDGFTDGARWAREEITEKLREIDIMDIDSWLLDKLADMIEGGHL*
B570J40625_1002680754F000311GGAGMYFELTAPSQVAFARAIWDAEIIGLDPEEMGSLTFNIGTGSIEKVTRLREKHNLKLIHESDSEQTGYRRN*
B570J40625_1002680755F003422N/AMTNELVSSKYTFVCDPNECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIPYTDTPLPTKEEQMEEATIGSDATHSPAVEYNPNQLVTYKIIHGYSDPEYATTKVASLEWDLHNARQTQKTNGSLTNKISLVKDIITEAYADSDDQETLRSIAEALDIELTRTVEWSATIEVSGTIELDLLADSDTDIESEIYDNLYVESQHGNIQVDDTEVTNVREN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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