Scaffold B570J40625_100207954

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100207954
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2108
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F020907	Metagenome / Metatranscriptome	221	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1002079544	F013514	GAG	MLVDSIEEIQKYLDDNNITFEEYMRENMITDEDRKYFDKIWVDAIYKNLGEDT*
B570J40625_1002079545	F049575	GGTGG	MTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMENMNAEVVCGDVEPIVVSGDVGG*
B570J40625_1002079546	F072267	GAG	MTEPTLKIGPSGYKLNPEKLKGAPQSILPYVCGAFYYTEDFEYFDVIKPYLDIPEKPKTLEEISQEFDEKIDKRIESIKHKFAELKCHQEYLYNQRFNRIIEDFEYAKKNGQFPLKPKFTIGTTLSANSNITSTFVIKQGNKHEGYYTIGNGYLRFYMPYKPNAITRWFMNKCLSIRWVDEKND*
B570J40625_1002079547	F020907	AGCAGG	MPHKNPKKRHKMTDEQLLNSLQGTMAKIDPYSVKKEAIDEYLIDTIEERLTRIEDKVDLLITQLKIEFYKKND*