Scaffold B570J40625_100199405

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100199405
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2172
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F019614	Metagenome / Metatranscriptome	228	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001994053	F019614	GAGG	MYSIYTMNVASIASNKIQVEYSAMPGDNREFLTFKVPNGWDDVKLLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR*
B570J40625_1001994054	F006181	N/A	MKKNLIHVIYPDEATYSYVATNDMSVTDNLERVFAEWNHGSGMECEMFIKSNKRSLSVNDIVCVNTKYFQCQSVGWKQVTDEYVYQLEQDVANSPRRSEGAWFALSDVMYSRTPDGVEVTLDGIDVL*
B570J40625_1001994055	F012446	N/A	TGNYDKVGMNKFVQIRKENNVAIYQRFNTDGTPRSYEVFIVKIVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRDIGQAEERFGQLVIKAKDSADAKEEAAKTGVPNRGRRASGNKIKLDMTLKSGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV*