Scaffold B570J40625_100185488

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100185488
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2287
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F011754	Metagenome / Metatranscriptome	287	Y
F042301	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001854883	F001008	GGAG	MSQSKHKKYQWIDGETADRITSMNLKDYRAYLKKELADWKKNPKTEDNPNGHWLHPEDVSGNIRRIEALNLIINDFITTSDEIK*
B570J40625_1001854884	F011754	GGA	MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGFDEDRCQAVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSENHSVKSAWDAYRFMLHMTENVDNEAVEVFKQ*
B570J40625_1001854885	F042301	AGGAG	MIKAGSKWSGNEENIFRVIQIVELDGHTWIHYIKENATEENREYSCYEESFLSRFREMPSD*