Scaffold B570J40625_100157754

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100157754
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2569
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F006385	Metagenome / Metatranscriptome	374	Y
F045756	Metagenome	152	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001577541	F002598	GAGG	MATKLYTIESLLVGKNYRSRSRHFEGEIVSAQKREGIWYGENTEAYLIEVNAKGLRNKFATIAVKVGE*
B570J40625_1001577542	F006385	GGAG	MILDNGTLIAIVIALAGSLSMMIAFWQRNVKLEKEIRRLQVVLRTERLLK*
B570J40625_1001577543	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEILFADLVDEFSLMFESDNERFDASRFALACYKELEMSK*
B570J40625_1001577547	F045756	GGAG	MTKYNVLISYVCEADSELEAVFALNKTLRPLSENELEKFNAFSVEVVSE*