Scaffold B570J40625_100151240

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100151240
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2648
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020910	Metagenome / Metatranscriptome	221	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001512401	F020910	N/A	DALVEFTARDDFGFPLGVVAMKCPCGRMLNYISYEEAYAPIITDVSKVTPREVVKINTNPYN*
B570J40625_1001512402	F035304	N/A	MDLNTLIEYIKINIISLEQDLENEDGADSIVPYLEGAIDVSRHYLEAVNGE*
B570J40625_1001512403	F034575	GGAGG	MENNTTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEQQLDLCIEAEEYSEEAMDSMARTEASGYLDALSEVYALTYAIAFAKEEVKNRKEILGE*
B570J40625_1001512406	F080058	AGAAGG	MNEYTVELIHEPSGAHMNFVMFSDVKQDEVALAKEIWADMSVVVLDYVEEEE*