Scaffold B570J40625_100146331

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100146331
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2713
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001463313	F008546	N/A	MKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAAINPFLCLPMNHYTIEVKTFKGRAIIALAFSTGFVVGILTIRPFFI*
B570J40625_1001463314	F041191	N/A	MKLLYKPTNLSCEFVIPHFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYAIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEINNLKII*
B570J40625_1001463315	F062749	N/A	MKTKPSLILWALSALFMSFWAVKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGWMQQWLKK*
B570J40625_1001463316	F102493	N/A	MTTTTFDLIWDYQDDDRENNIKGGSVLIDATYGNKKVKLSAKLEELINEELNPDNF*
B570J40625_1001463319	F044325	N/A	MKQLIQKLLFGYRSNPAAYTPKGGAKLTYKGGNAEAIHSALVLMQYQIRNAKN*