Scaffold B570J40625_100144483

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100144483
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2738
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068494	Metagenome	124	N
F082686	Metagenome	113	N
F086682	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001444831	F086682	N/A	MSKKSPYSNAYKIGLSVFIVLVVLISTIVISIIKSCEPKVSRFFNPKTNMTDTVFYDGPDTIYLPNTQKIIVHDTFRVVCHKKHCEEVKVIKDTTTK*
B570J40625_1001444832	F068494	N/A	MDRLESILVSFFRNIYPFITKLKVDKDSDGDDVEYTLTLFCDGKKIQSYLPISPNFIDGTGKLKKDLLDRPFNHFVSVTDNNQSNVGRAKTLETSLKRDFYLARRMSGSEFKSGPVTLRIVLQ*
B570J40625_1001444833	F082686	AGGA	MKRFILTEEDKNDIKLQYQGSIDKKFYDFLKANVEVEGRNVEYFEKPFVLLYVDGKSRLLNNSKKYLVNVLINAYGDDFPNLNDASKRLTAKKFIDELKKQYFYED*