Scaffold B570J40625_100137586

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100137586
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2837
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F017133	Metagenome / Metatranscriptome	242	Y
F019325	Metagenome / Metatranscriptome	230	Y
F021757	Metagenome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001375861	F019325	AGG	MTQLTETLFSTIVHDFHNGGVKSSYGLDTYTRKEILAYLLRSKGCECINCL*
B570J40625_1001375865	F021757	AGGTGG	MMTRKDYVIVAQILSSYKDLIGDEFTFHDLVDEFAGYFAEDNPNFKPDVFITACNRDEFSPSLN*
B570J40625_1001375867	F017133	AGG	MRNRLMRTTFAKANQYPLGMMNTCPCGQVVLAPALYHEGEAHWENPNKCKDIYEGNN*
B570J40625_1001375868	F000447	GAGG	MGYVEIFRFDEQGAGWVDLAQANKDELFNLEVGLLNEGVLFTTKEND*
B570J40625_1001375869	F000808	AGGAG	MEYNYSLTASYDGQLHFTMRTADLMEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVTVK*