Scaffold B570J40625_100123890

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100123890
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3063
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F028095	Metagenome	192	Y
F063683	Metagenome	129	N
F103226	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001238901	F063683	N/A	VKNKLATLQDRLDNPLKDDHTALRQLEKSLPLSDAAKKKLNKLNKNTMRAYLEFSLMDQEVDHLAKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFRNYPYKDDDCEMYPIIWVKLDYNNSNKKMDYV
B570J40625_1001238902	F000962	N/A	MNIHVPEELKIKYPQYEFRGKQREINNRIVIEAYNPTTEQTFFYSFEEDFFWIAGQIPDYKLQKV*
B570J40625_1001238904	F028095	N/A	MSEQTYMNLKDAVKRPKLSKEMVINPVNRENKDFKRVVDKYQTWCTDEGGYKDSRVTYENDIIDCLFETDTDGYALATFLKERAYIEPDSELVEILDCVSNVKYSLTKQIIGQWTKENFLEIPSDVIGKKVNAKQGYNKYENHYITTIRPDTYEITVSDKIDKNGGYIVGFENVTFL*
B570J40625_1001238908	F103226	N/A	MTKTELKKLKELDTFLRERNMQLRGTNIIVRFNANKINCVQLDLDMNWEVGYSNIKELNETPTIKNQYYIEYGKIKQD*