Scaffold B570J40625_100116139

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100116139
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3212
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001161392	F005503	GGAG	MTTSEVGLFVIMAIACILWAICSYSVGYKEGHKDGYQRGKAVGRHASSQAVR*
B570J40625_1001161394	F000403	N/A	MHPCRDSDCDGDSMSGPIEMINPRTMSCTLMEDGEIIATYKVEQCDKCSRLVKFDEFGYQKGFGNEKIIWFCAECR*
B570J40625_1001161395	F010982	GGAG	MIMVRLSREDEIIAHSAGLARESRYGSNPKFQGNKGNFHNAVVIHSEAVGAEMAVARYFGVEDFVPTVNTFKNEPDVYWNGVAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPTYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
B570J40625_1001161396	F003182	AGGA	MPILEFDCSICAKLYGKAKQRHGIRKTSELSLHEWFATCLGCGALGIKLVDDKKVEGLSL