NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100113528

Scaffold B570J40625_100113528


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100113528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3267
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10011352810F016662GGAGMTYLVATTEVIYSEEALIKMMLATGEYGINAHPISHEAMVEFVKDNEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNRLEIV*
B570J40625_10011352811F043404GAGGMIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEVVEIRIGSKK*
B570J40625_1001135285F007525AGGAMKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMSLSLPNLVNGELSDEGVTIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEVYDTFYDAVDAGIDHILDDRNW*
B570J40625_1001135286F081267AGGAGMSYEYHWVVVYDEDWGAFMVDVETTLLNLSEHPGVIYNKTTGRWEFAEEGSELEAEYQRLEEILAYNLTRLDLTAEIG*
B570J40625_1001135289F030094GGAGMKLRGIFEGTFESVWSMEVPQLEWDSYLDKNPDFDENDRDDIEEMWDYFKRVVGCYDECDDSIDTEIHMTGIETYGVEVEIN*
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