Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100112349 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100112349 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3292
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3292

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F020355	Metagenome / Metatranscriptome	224	N
F021538	Metagenome	218	Y
F105158	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001123491	F105158	N/A	MLVENLPKNQKEHYHNKIRDWEKRTGKSMNVKGVSKIYDCNIEDAEYNTPAAMNMMKVHGCYIYYDLMTEEDIRSNGTNWLKYSYAHVNGKTYKYYYETKQWGQEIDEITLDRYNYTKWKAAKLDKTNFPYTLDPGEDYLPYALENKHIGSKFDDFAKENNIELKRDINWAVKMLEHGKMMSREANPSLTLFPKKYDHAESTITTSD
B570J40625_1001123492	F021538	AGGA	VDKTTIINCDCLCHSLHVRPDVESKTVDISLWNYGFNDGKLNWKKRLQILFDGFAYSDLVVLDKEELDKLISALEDARGKLT*
B570J40625_1001123493	F005589	GGA	MGKFRHSFWRYIPSTDERQSFFKFVESFETDSDAVPKFDDHYCIDHIFDTANGQMRVKNHSAPEYCVSKYVGWSLNLPPVEKTNKQEIYMVIHRSSFTHKKIEFDEFLEPKNKRYTQEEWELLLSSIEKKFNRQKEWAKDGIKIPTQYEDGTQVFKTEEEFRAFSLGRRAYFLFHLVRNYNFTHLVHRLNIGYTSG*
B570J40625_1001123496	F020355	N/A	KSDVILRWYENDKWSFFLDDLDTSASTVFLMGSHFMDTIYDGGTLGQSSTPSHVSNGVMLMSPKKTANIAGEKILHVTFEVDPHFSGRRWCDVLLLPAGETVYSGKAADKIAMNTKSGKLFRWAIGAGHHEINVDTGYNTDGSRKSFRVPVKFADRGSIYSYPAPYRSVNHLTEYKVGTFVANSVVQNGNDVNVKLSSKFFDSNKFPAFNLESNYSPKSGWIRFAEFGGAAEYEWTPGTFKMIDDIDFNPNNWWIKETSKASLNKLMDAYSSNRSGAIIYRSTMNAISGKYEGEIFFRPSVERRDYPLNRTWQGLDRRVQFDLYVSKNRVVVVEDGYLVADSPLPVDFPFEEINVNYTHLIYHTWNEIGEQRTWNPDNAYWINFRPFADERHWDNMGFEVLTSFPDVKLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100112349

Overview

Ecosystem & Geography

Associated Families

Sequences