Scaffold B570J40625

Basic Information
Taxon OID	3300002835 Open in IMG/M
Scaffold ID	B570J40625_100097924 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002835 Open in IMG/M

Scaffold ID

B570J40625_100097924 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3644
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3644

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F040616	Metagenome / Metatranscriptome	161	N
F082581	Metagenome	113	N
F085603	Metagenome / Metatranscriptome	111	N
F101030	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000979243	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYYAE*
B570J40625_1000979244	F085603	N/A	MNVKIEFNTENAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRHILKDSNGNRIGVVNIGNN*
B570J40625_1000979245	F101030	N/A	MTLTQFQQAFAIAKDFNRDLSNVDDSILYGFGLSSFKPVHTTLEAVAKTIRWQALQFNGEWNAEALNEVAENGRKNFLILG*
B570J40625_1000979247	F082581	N/A	MNNVNNVSTVNATSKTVRKVGRPAKNLTLILNRSFTLKDLQILNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPAAIYINKSVYEANLRNLAKAKNKLVNLNESSTVTA*
B570J40625_1000979248	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGSHRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKESAEAKEEAAKTGVRNRGRRGTSKKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV*
B570J40625_1000979249	F015582	N/A	MPDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPDFMPEYDPLSDPEYNQSLGKYQETTYSFSSRDLRSCSNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J40625_100097924

Overview

Ecosystem & Geography

Associated Families

Sequences