Scaffold B570J40625_100092251

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100092251
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3808
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F005389	Metagenome / Metatranscriptome	402	Y
F009005	Metagenome / Metatranscriptome	324	Y
F010683	Metagenome	300	Y
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1000922512	F005389	N/A	MANKSKQAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKTLRNEWVG*
B570J40625_1000922513	F010683	N/A	MKSKKVTKKPASKKAVAMNVIKHKRVILEEVGTEALPEMVFVSAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVENI*
B570J40625_1000922517	F009005	N/A	MSEQEMINHAARIGMDEELVSYAKQIQRQLGSEGDEAFWLDCLEMAYNELILKEIYS*
B570J40625_1000922518	F093404	N/A	MGEQVADNRAPHSTCKLFENKDGEYYPVCQPMETPRLIRGEYHPIGSTLQYPTKWGRKKASLHLVGTKLRDAKLELENLQTELAKLERCYSDVLLWEDDSKL*
B570J40625_1000922519	F000785	N/A	MRVTNKRLGMKFDCVKLMNWAQDLLGPSKCTAIAFTWDAEEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQRFRWYNHYNLKLGYKKNPYEIQARENEKLVKRAYKKRK*